Variant report

Variant	rs3119876
Chromosome Location	chr13:61414760-61414761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1067969	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1067970	0.82[AMR][1000 genomes]
rs1068735	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12428173	1.00[ASN][1000 genomes]
rs1394318	1.00[ASN][1000 genomes]
rs1606637	1.00[ASN][1000 genomes]
rs17059106	1.00[ASN][1000 genomes]
rs17059118	0.86[ASN][1000 genomes]
rs1847506	1.00[ASN][1000 genomes]
rs1849688	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs186181	1.00[ASN][1000 genomes]
rs186182	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1875849	0.86[ASN][1000 genomes]
rs2655710	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2671284	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2671285	0.82[AMR][1000 genomes]
rs2770917	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs300324	1.00[ASN][1000 genomes]
rs301634	1.00[ASN][1000 genomes]
rs301686	1.00[ASN][1000 genomes]
rs301693	1.00[ASN][1000 genomes]
rs3119874	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3127055	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3850087	1.00[ASN][1000 genomes]
rs3861175	1.00[ASN][1000 genomes]
rs3914416	1.00[ASN][1000 genomes]
rs3914417	1.00[ASN][1000 genomes]
rs4542547	1.00[ASN][1000 genomes]
rs4886290	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7997129	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7998134	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9563846	1.00[ASN][1000 genomes]
rs9570380	1.00[ASN][1000 genomes]
rs9570382	0.87[ASN][1000 genomes]
rs9598176	1.00[ASN][1000 genomes]
rs9598193	1.00[ASN][1000 genomes]
rs9598199	1.00[ASN][1000 genomes]
rs9598206	0.86[ASN][1000 genomes]
rs997706	0.87[ASN][1000 genomes]
rs997707	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61413200-61418800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links