Variant report

Variant	rs997707
Chromosome Location	chr13:61415216-61415217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1067969	0.87[ASN][1000 genomes]
rs1068735	0.87[ASN][1000 genomes]
rs12428173	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1394318	0.87[ASN][1000 genomes]
rs1606637	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059106	0.87[ASN][1000 genomes]
rs1847506	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1849688	0.87[ASN][1000 genomes]
rs186181	0.87[ASN][1000 genomes]
rs186182	0.87[ASN][1000 genomes]
rs2655710	0.87[ASN][1000 genomes]
rs2671284	0.87[ASN][1000 genomes]
rs2770917	0.87[ASN][1000 genomes]
rs300324	0.87[ASN][1000 genomes]
rs301634	0.87[ASN][1000 genomes]
rs301686	0.87[ASN][1000 genomes]
rs301693	0.87[ASN][1000 genomes]
rs3119876	0.87[ASN][1000 genomes]
rs3127055	0.87[ASN][1000 genomes]
rs3850087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3861175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3914416	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3914417	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4542547	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886290	0.87[ASN][1000 genomes]
rs7997129	0.87[ASN][1000 genomes]
rs7998134	0.87[ASN][1000 genomes]
rs9563846	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9570380	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9570382	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9598176	0.87[ASN][1000 genomes]
rs9598193	0.87[ASN][1000 genomes]
rs9598199	0.87[ASN][1000 genomes]
rs997706	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61413200-61418800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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