Variant report

Variant	rs1416065
Chromosome Location	chr1:211275285-211275286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11119677	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11119679	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12027884	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12124026	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs2211038	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4265492	0.86[CHB][hapmap]
rs4511184	0.85[ASN][1000 genomes]
rs4592307	0.86[CHB][hapmap]
rs4620600	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951493	0.86[CHB][hapmap]
rs4951495	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs4951499	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4951502	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4951504	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4951716	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6685217	0.81[ASW][hapmap];0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1416065	C1orf210	trans	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211256800-211276600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:211256800-211277000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:211256800-211282400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:211264400-211277400	Weak transcription	Brain Anterior Caudate	brain
6	chr1:211265400-211277200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:211266400-211280200	Weak transcription	Pancreas	Pancrea
8	chr1:211269800-211278600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:211271400-211286000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211272800-211276000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:211273000-211278000	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:211273200-211277800	Strong transcription	HSMMtube	muscle
13	chr1:211273200-211281200	Weak transcription	A549	lung
14	chr1:211273200-211282400	Strong transcription	HSMM	muscle
15	chr1:211273400-211276400	Weak transcription	Osteobl	bone
16	chr1:211274000-211276800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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