Variant report

Variant	rs1419675
Chromosome Location	chr6:30092707-30092708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2021723	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2021731	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2107202	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2240069	0.84[AFR][1000 genomes]
rs2244066	0.81[AFR][1000 genomes]
rs2257914	0.81[AFR][1000 genomes]
rs2517591	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2517593	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2523974	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2844798	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3132122	0.87[AFR][1000 genomes]
rs3132123	0.89[AFR][1000 genomes]
rs3132677	0.87[AFR][1000 genomes]
rs3132678	0.87[AFR][1000 genomes]
rs3132679	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884056	chr6:30089623-30097818	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1419675	HIST1H4F	cis	cerebellum	SCAN
rs1419675	HIST1H2BI	cis	parietal	SCAN
rs1419675	ZKSCAN3	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30092400-30093600	Weak transcription	HepG2	liver
2	chr6:30092400-30096200	Weak transcription	Hela-S3	cervix
3	chr6:30092600-30097200	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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