Variant report

Variant	rs2107202
Chromosome Location	chr6:30105743-30105744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1419675	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2021723	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2021731	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2240069	0.82[AFR][1000 genomes]
rs2244066	0.80[AFR][1000 genomes]
rs2257914	0.80[AFR][1000 genomes]
rs2517591	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2517593	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2523974	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2844798	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3132122	0.85[AFR][1000 genomes]
rs3132123	0.87[AFR][1000 genomes]
rs3132677	0.84[AFR][1000 genomes]
rs3132678	0.85[AFR][1000 genomes]
rs3132679	0.84[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2107202	HIST1H4F	cis	cerebellum	SCAN
rs2107202	HIST1H2BI	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30103800-30107400	Active TSS	Placenta	Placenta
2	chr6:30104200-30106400	Weak transcription	Stomach Mucosa	stomach
3	chr6:30105000-30106600	Weak transcription	Fetal Intestine Large	intestine
4	chr6:30105200-30106200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:30105400-30106400	Weak transcription	HepG2	liver
6	chr6:30105400-30111600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:30105400-30111800	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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