Variant report

Variant	rs2844798
Chromosome Location	chr6:30102233-30102234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr6:30101848-30102797	HepG2	liver:	n/a	n/a
2	RXRA	chr6:30101929-30102513	HepG2	liver:	n/a	chr6:30102192-30102208
3	FOXA1	chr6:30101945-30102526	HepG2	liver:	n/a	n/a
4	FOXA2	chr6:30101972-30102728	HepG2	liver:	n/a	n/a
5	MYBL2	chr6:30101763-30102809	HepG2	liver:	n/a	n/a
6	NR2F2	chr6:30101747-30102819	HepG2	liver:	n/a	n/a
7	FOXA1	chr6:30101875-30102656	HepG2	liver:	n/a	n/a
8	HNF4A	chr6:30101964-30102482	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102192-30102208 chr6:30102346-30102361
9	EP300	chr6:30101877-30102797	HepG2	liver:	n/a	n/a
10	HDAC2	chr6:30101743-30102543	HepG2	liver:	n/a	n/a
11	CTCF	chr6:30102200-30102350	HepG2	liver:	n/a	n/a
12	TEAD4	chr6:30101719-30102801	HepG2	liver:	n/a	n/a
13	ARID3A	chr6:30101514-30102736	HepG2	liver:	n/a	n/a
14	RCOR1	chr6:30102200-30102632	HepG2	liver:	n/a	n/a
15	CEBPB	chr6:30101987-30102553	HepG2	liver:	n/a	chr6:30102290-30102303
16	HDAC2	chr6:30101914-30102753	HepG2	liver:	n/a	n/a
17	FOXA1	chr6:30101794-30102495	HepG2	liver:	n/a	n/a
18	TEAD4	chr6:30102021-30102249	HepG2	liver:	n/a	n/a
19	MAZ	chr6:30102080-30102538	HepG2	liver:	n/a	n/a
20	HNF4A	chr6:30102012-30102634	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102192-30102208 chr6:30102346-30102361
21	FOXA2	chr6:30101604-30102652	HepG2	liver:	n/a	n/a
22	HNF4G	chr6:30101932-30102693	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102345-30102360 chr6:30102192-30102208
23	HNF4G	chr6:30101969-30102762	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102345-30102360 chr6:30102192-30102208
24	EP300	chr6:30101809-30102846	HepG2	liver:	n/a	n/a
25	RAD21	chr6:30101940-30102489	HepG2	liver:	n/a	n/a
26	CEBPB	chr6:30101942-30102492	HepG2	liver:	n/a	chr6:30102290-30102303
27	MYBL2	chr6:30101858-30102853	HepG2	liver:	n/a	n/a
28	FOXA1	chr6:30101948-30102682	HepG2	liver:	n/a	n/a
29	NFIC	chr6:30101874-30102750	HepG2	liver:	n/a	n/a
30	CEBPB	chr6:30102006-30102367	HepG2	liver:	n/a	chr6:30102290-30102303
31	MBD4	chr6:30101932-30102679	HepG2	liver:	n/a	n/a
32	CEBPB	chr6:30101508-30102536	HepG2	liver:	n/a	chr6:30102290-30102303
33	TBP	chr6:30102068-30102432	HepG2	liver:	n/a	n/a
34	JUND	chr6:30102127-30102540	HepG2	liver:	n/a	n/a
35	ESRRA	chr6:30102058-30102554	HepG2	liver:	n/a	n/a
36	EP300	chr6:30102087-30102540	HepG2	liver:	n/a	n/a
37	NR2F2	chr6:30101944-30102839	HepG2	liver:	n/a	n/a
38	NFIC	chr6:30101897-30102584	HepG2	liver:	n/a	n/a
39	RAD21	chr6:30102229-30102400	HepG2	liver:	n/a	n/a
40	TCF7L2	chr6:30101901-30102387	HepG2	liver:	n/a	n/a
41	MAX	chr6:30101965-30102797	HepG2	liver:	n/a	n/a
42	HNF4A	chr6:30101942-30102756	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102192-30102208 chr6:30102346-30102361

Variant related genes	Relation type
ENSG00000252228	TF binding region
TRIM40	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1123966	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1419675	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1967	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2021723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107195	0.89[EUR][1000 genomes]
rs2107202	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2244066	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2257914	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2517591	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517593	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523733	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2523734	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2523974	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523995	0.82[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30099000-30103600	Weak transcription	A549	lung
2	chr6:30099400-30103200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:30099400-30103400	Weak transcription	Hela-S3	cervix
4	chr6:30101400-30104000	Enhancers	Fetal Intestine Small	intestine
5	chr6:30101800-30105000	Enhancers	Fetal Intestine Large	intestine
6	chr6:30102000-30102400	Enhancers	HepG2	liver
7	chr6:30102200-30102600	Bivalent Enhancer	Small Intestine	intestine
8	chr6:30102200-30102800	Bivalent Enhancer	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links