Variant report

Variant	rs1967
Chromosome Location	chr6:30125537-30125538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30120236..30122567-chr6:30123683..30125574,2	MCF-7	breast:
2	chr6:30083851..30086480-chr6:30123012..30125789,2	MCF-7	breast:
3	chr6:30034609..30036476-chr6:30124190..30127088,3	K562	blood:

Variant related genes	Relation type
ENSG00000204619	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1123966	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021723	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2021731	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2107195	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2244066	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2257914	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2517591	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517593	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2523733	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523734	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2523974	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844784	0.86[AFR][1000 genomes]
rs2844798	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1967	ZKSCAN4	cis	cerebellum	SCAN
rs1967	HIST1H4F	cis	cerebellum	SCAN
rs1967	HIST1H2BN	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30121000-30128200	Weak transcription	Lung	lung
2	chr6:30121600-30125600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:30122200-30128200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:30122400-30125800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:30123000-30126200	Enhancers	NHDF-Ad	bronchial
6	chr6:30123200-30126200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:30124400-30125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:30124400-30125600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:30124400-30125600	Weak transcription	Osteobl	bone
10	chr6:30124400-30130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:30124800-30127000	Enhancers	GM12878-XiMat	blood
12	chr6:30124800-30127800	Weak transcription	HepG2	liver
13	chr6:30124800-30130200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:30124800-30130200	Weak transcription	Stomach Mucosa	stomach
15	chr6:30124800-30130400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:30124800-30130800	Weak transcription	A549	lung
17	chr6:30124800-30132600	Weak transcription	Right Atrium	heart
18	chr6:30125000-30126600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:30125000-30128200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:30125000-30130200	Weak transcription	Fetal Intestine Large	intestine
21	chr6:30125000-30130200	Weak transcription	Fetal Intestine Small	intestine
22	chr6:30125200-30128400	Weak transcription	Rectal Mucosa Donor 31	rectum

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