Variant report

Variant	rs2844784
Chromosome Location	chr6:30148434-30148435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1123966	0.88[AFR][1000 genomes]
rs11969573	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1967	0.86[AFR][1000 genomes]
rs2023475	0.94[ASN][1000 genomes]
rs2107195	0.95[AFR][1000 genomes]
rs2107196	0.82[AFR][1000 genomes]
rs2244066	0.80[AFR][1000 genomes]
rs2257914	0.80[AFR][1000 genomes]
rs2428503	0.92[ASN][1000 genomes]
rs2517590	0.94[ASN][1000 genomes]
rs2517611	0.87[ASN][1000 genomes]
rs2517614	0.92[ASN][1000 genomes]
rs2523721	0.80[ASN][1000 genomes]
rs2523722	0.92[ASN][1000 genomes]
rs2523733	0.88[AFR][1000 genomes]
rs2523734	0.85[AFR][1000 genomes]
rs2523741	0.89[ASN][1000 genomes]
rs28360014	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2844782	0.82[AFR][1000 genomes]
rs55957413	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59975149	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61154150	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73426382	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884057	chr6:30140540-30149251	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30139000-30152000	Weak transcription	Liver	Liver
2	chr6:30142000-30149200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
4	chr6:30147600-30150800	Weak transcription	HepG2	liver
5	chr6:30147800-30152000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:30148000-30151600	Weak transcription	Primary T cells from cord blood	blood
7	chr6:30148000-30152000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:30148000-30152000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:30148000-30152200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:30148000-30152200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:30148000-30152600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:30148000-30155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
14	chr6:30148200-30152000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:30148200-30152400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:30148200-30154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:30148400-30154000	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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