Variant report

Variant	rs2107195
Chromosome Location	chr6:30137866-30137867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:30137860-30138010	HCFaa	heart:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
2	RAD21	chr6:30137697-30138244	H1-hESC	embryonic stem cell:	n/a	n/a
3	FOXA1	chr6:30137831-30138000	T-47D	breast:	n/a	n/a
4	RAD21	chr6:30137775-30138156	IMR90	lung:	n/a	n/a
5	SMC3	chr6:30137540-30138294	SK-N-SH	brain:	n/a	n/a
6	RAD21	chr6:30137739-30138192	A549	lung:	n/a	n/a
7	CTCF	chr6:30137860-30138010	HCT-116	colon:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
8	CTCF	chr6:30137858-30138096	GM10266	blood:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
9	RAD21	chr6:30137429-30138331	HepG2	liver:	n/a	n/a
10	CTCF	chr6:30137726-30138073	H1-hESC	embryonic stem cell:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
11	ZNF143	chr6:30137815-30138143	K562	blood:	n/a	n/a
12	CTCF	chr6:30137860-30138010	A549	lung:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
13	RAD21	chr6:30137730-30138158	GM12878	blood:	n/a	n/a
14	CTCF	chr6:30137860-30138010	GM12865	blood:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
15	SMC3	chr6:30137748-30138202	HepG2	liver:	n/a	n/a
16	RAD21	chr6:30137743-30138177	HepG2	liver:	n/a	n/a
17	CTCF	chr6:30137773-30138186	GM12878	blood:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
18	CTCF	chr6:30137765-30138179	K562	blood:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
19	CTCF	chr6:30137625-30138368	HCT-116	colon:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
20	CTCF	chr6:30137858-30138107	LNCaP	prostate:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
21	MAZ	chr6:30137843-30138063	HepG2	liver:	n/a	n/a
22	ATF1	chr6:30137825-30138023	K562	blood:	n/a	n/a
23	CTCF	chr6:30137772-30138262	K562	blood:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
24	CTCF	chr6:30137840-30137990	A549	lung:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
25	E2F4	chr6:30137731-30137988	MCF10A-Er-Src	breast:	n/a	n/a
26	CTCF	chr6:30137866-30138114	LNCaP	prostate:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
27	CTCF	chr6:30137860-30138010	HCM	heart:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
28	SMC3	chr6:30137716-30138163	Hela-S3	cervix:	n/a	n/a
29	RAD21	chr6:30137860-30138089	K562	blood:	n/a	n/a
30	CTCF	chr6:30137819-30138132	Medullo	brain:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
31	CTCF	chr6:30137860-30138010	NHDF-neo	bronchial:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
32	RAD21	chr6:30137621-30138181	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr6:30137854-30138105	MCF-7	breast:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
34	RAD21	chr6:30137633-30138220	MCF-7	breast:	n/a	n/a
35	CTCF	chr6:30137762-30138038	ECC-1	luminal epithelium:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
36	CTCF	chr6:30137858-30138115	Gliobla	brain:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
37	RAD21	chr6:30137601-30138111	HepG2	liver:	n/a	n/a
38	KAP1	chr6:30137718-30138225	HEK293	kidney:	n/a	n/a
39	POLR2A	chr6:30137576-30139040	HepG2	liver:	n/a	n/a
40	CTCF	chr6:30137852-30138122	HepG2	liver:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
41	CTCF	chr6:30137767-30138127	SK-N-SH_RA	brain:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
42	FOXA2	chr6:30137835-30138104	HepG2	liver:	n/a	n/a
43	CTCF	chr6:30137805-30138069	ECC-1	luminal epithelium:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
44	CTCF	chr6:30137695-30138144	K562	blood:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
45	CTCF	chr6:30137860-30138010	BE2_C	brain:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
46	CTCF	chr6:30137765-30138080	A549	lung:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
47	CTCF	chr6:30137731-30138259	MCF-7	breast:	n/a	chr6:30137963-30137984 chr6:30137968-30137986
48	RAD21	chr6:30137685-30138182	MCF-7	breast:	n/a	n/a
49	ZNF143	chr6:30137815-30138149	GM12878	blood:	n/a	n/a
50	RAD21	chr6:30137758-30138161	SK-N-SH_RA	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30098581..30099368-chr6:30137398..30138042,2	K562	blood:
2	chr6:30127588..30130090-chr6:30135576..30138983,3	K562	blood:

Variant related genes	Relation type
TRIM15	TF binding region
ENSG00000204613	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1123966	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1967	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2021723	0.89[EUR][1000 genomes]
rs2021731	0.89[EUR][1000 genomes]
rs2244066	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2257914	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2517591	0.89[EUR][1000 genomes]
rs2517593	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2523733	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2523734	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2523974	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2523995	0.80[EUR][1000 genomes]
rs2844784	0.95[AFR][1000 genomes]
rs2844798	0.89[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30134600-30139600	Strong transcription	Duodenum Mucosa	Duodenum
2	chr6:30134800-30139600	Strong transcription	Rectal Mucosa Donor 31	rectum
3	chr6:30135000-30139000	Strong transcription	Liver	Liver
4	chr6:30135600-30141200	Strong transcription	HepG2	liver
5	chr6:30137200-30139600	Weak transcription	Colonic Mucosa	Colon
6	chr6:30137400-30138000	Enhancers	Hela-S3	cervix
7	chr6:30137400-30138200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:30137600-30138200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:30137800-30138000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:30137800-30138200	Weak transcription	Fetal Intestine Large	intestine
11	chr6:30137800-30139400	Strong transcription	Fetal Intestine Small	intestine

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