Variant report

Variant	rs2523995
Chromosome Location	chr6:30102184-30102185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr6:30101848-30102797	HepG2	liver:	n/a	n/a
2	RXRA	chr6:30101929-30102513	HepG2	liver:	n/a	chr6:30102192-30102208
3	FOXA1	chr6:30101945-30102526	HepG2	liver:	n/a	n/a
4	FOXA2	chr6:30101972-30102728	HepG2	liver:	n/a	n/a
5	MYBL2	chr6:30101763-30102809	HepG2	liver:	n/a	n/a
6	NR2F2	chr6:30101747-30102819	HepG2	liver:	n/a	n/a
7	FOXA1	chr6:30101875-30102656	HepG2	liver:	n/a	n/a
8	HNF4A	chr6:30101964-30102482	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102192-30102208 chr6:30102346-30102361
9	EP300	chr6:30101877-30102797	HepG2	liver:	n/a	n/a
10	HDAC2	chr6:30101743-30102543	HepG2	liver:	n/a	n/a
11	TEAD4	chr6:30101719-30102801	HepG2	liver:	n/a	n/a
12	ARID3A	chr6:30101514-30102736	HepG2	liver:	n/a	n/a
13	CEBPB	chr6:30101987-30102553	HepG2	liver:	n/a	chr6:30102290-30102303
14	HDAC2	chr6:30101914-30102753	HepG2	liver:	n/a	n/a
15	FOXA1	chr6:30101794-30102495	HepG2	liver:	n/a	n/a
16	TEAD4	chr6:30102021-30102249	HepG2	liver:	n/a	n/a
17	MAZ	chr6:30102080-30102538	HepG2	liver:	n/a	n/a
18	HNF4A	chr6:30102012-30102634	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102192-30102208 chr6:30102346-30102361
19	FOXA2	chr6:30101604-30102652	HepG2	liver:	n/a	n/a
20	HNF4G	chr6:30101932-30102693	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102345-30102360 chr6:30102192-30102208
21	HNF4G	chr6:30101969-30102762	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102345-30102360 chr6:30102192-30102208
22	EP300	chr6:30101809-30102846	HepG2	liver:	n/a	n/a
23	RAD21	chr6:30101940-30102489	HepG2	liver:	n/a	n/a
24	CEBPB	chr6:30101942-30102492	HepG2	liver:	n/a	chr6:30102290-30102303
25	MYBL2	chr6:30101858-30102853	HepG2	liver:	n/a	n/a
26	FOXA1	chr6:30101948-30102682	HepG2	liver:	n/a	n/a
27	NFIC	chr6:30101874-30102750	HepG2	liver:	n/a	n/a
28	CEBPB	chr6:30102006-30102367	HepG2	liver:	n/a	chr6:30102290-30102303
29	MBD4	chr6:30101932-30102679	HepG2	liver:	n/a	n/a
30	CEBPB	chr6:30101508-30102536	HepG2	liver:	n/a	chr6:30102290-30102303
31	TBP	chr6:30102068-30102432	HepG2	liver:	n/a	n/a
32	JUND	chr6:30102127-30102540	HepG2	liver:	n/a	n/a
33	ESRRA	chr6:30102058-30102554	HepG2	liver:	n/a	n/a
34	EP300	chr6:30102087-30102540	HepG2	liver:	n/a	n/a
35	SMC3	chr6:30102035-30102212	HepG2	liver:	n/a	n/a
36	NR2F2	chr6:30101944-30102839	HepG2	liver:	n/a	n/a
37	NFIC	chr6:30101897-30102584	HepG2	liver:	n/a	n/a
38	TCF7L2	chr6:30101901-30102387	HepG2	liver:	n/a	n/a
39	MAX	chr6:30101965-30102797	HepG2	liver:	n/a	n/a
40	HNF4A	chr6:30101942-30102756	HepG2	liver:	n/a	chr6:30102197-30102204 chr6:30102192-30102208 chr6:30102346-30102361

Variant related genes	Relation type
ENSG00000252228	TF binding region
TRIM40	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2021723	0.82[EUR][1000 genomes]
rs2021731	0.82[EUR][1000 genomes]
rs2107195	0.80[EUR][1000 genomes]
rs2244066	0.81[EUR][1000 genomes]
rs2517591	0.82[EUR][1000 genomes]
rs2517593	0.82[EUR][1000 genomes]
rs2523974	0.82[EUR][1000 genomes]
rs2844798	0.82[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2523995	ZKSCAN4	cis	cerebellum	SCAN
rs2523995	HIST1H2BN	cis	parietal	SCAN
rs2523995	HIST1H4F	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30099000-30103600	Weak transcription	A549	lung
2	chr6:30099400-30103200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:30099400-30103400	Weak transcription	Hela-S3	cervix
4	chr6:30101400-30104000	Enhancers	Fetal Intestine Small	intestine
5	chr6:30101800-30105000	Enhancers	Fetal Intestine Large	intestine
6	chr6:30102000-30102400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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