Variant report

Variant	rs2517591
Chromosome Location	chr6:30103049-30103050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1123966	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1419675	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1967	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2021723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107195	0.89[EUR][1000 genomes]
rs2107202	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2244066	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2257914	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2517593	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523733	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2523734	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2523974	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523995	0.82[EUR][1000 genomes]
rs2844798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2517591	ZKSCAN4	cis	cerebellum	SCAN
rs2517591	HIST1H4F	cis	cerebellum	SCAN
rs2517591	HIST1H2BN	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30099000-30103600	Weak transcription	A549	lung
2	chr6:30099400-30103200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:30099400-30103400	Weak transcription	Hela-S3	cervix
4	chr6:30101400-30104000	Enhancers	Fetal Intestine Small	intestine
5	chr6:30101800-30105000	Enhancers	Fetal Intestine Large	intestine
6	chr6:30102800-30103400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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