Variant report

Variant	rs2523734
Chromosome Location	chr6:30129676-30129677
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1123966	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1967	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2021723	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2021731	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2107195	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2244066	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2257914	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517591	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2517593	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2523733	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2523974	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2844784	0.85[AFR][1000 genomes]
rs2844798	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2523734	ZKSCAN4	cis	cerebellum	SCAN
rs2523734	HIST1H2BN	cis	parietal	SCAN
rs2523734	HIST1H4F	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30124400-30130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:30124800-30130200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:30124800-30130200	Weak transcription	Stomach Mucosa	stomach
4	chr6:30124800-30130400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:30124800-30130800	Weak transcription	A549	lung
6	chr6:30124800-30132600	Weak transcription	Right Atrium	heart
7	chr6:30125000-30130200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:30125000-30130200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:30126000-30130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:30126200-30130800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:30127800-30130200	Enhancers	HepG2	liver
12	chr6:30128800-30130800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:30129200-30130200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:30129200-30130800	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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