Variant report

Variant	rs1123966
Chromosome Location	chr6:30133017-30133018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1967	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021723	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2021731	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2107195	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2244066	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2257914	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2517591	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517593	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2523733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523734	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2523974	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844784	0.88[AFR][1000 genomes]
rs2844798	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30131200-30134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:30131400-30134800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:30131400-30134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:30131400-30134800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:30132000-30133800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:30132600-30134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:30132600-30134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:30132800-30134600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:30132800-30134800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:30132800-30134800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:30132800-30135000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:30132800-30135400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:30132800-30136200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:30133000-30134200	Weak transcription	HepG2	liver
15	chr6:30133000-30134800	Weak transcription	Fetal Intestine Large	intestine
16	chr6:30133000-30134800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:30133000-30135000	Weak transcription	Liver	Liver
18	chr6:30133000-30135000	Weak transcription	Colonic Mucosa	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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