Variant report

Variant	rs2244066
Chromosome Location	chr6:30118658-30118659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1123966	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1419675	0.81[AFR][1000 genomes]
rs1967	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2021723	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2021731	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2107195	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2107202	0.80[AFR][1000 genomes]
rs2257914	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517591	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2517593	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2523733	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2523734	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2523974	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2523995	0.81[EUR][1000 genomes]
rs2844784	0.80[AFR][1000 genomes]
rs2844798	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30112800-30119200	Strong transcription	Placenta	Placenta
2	chr6:30112800-30120800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:30113000-30119600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:30116000-30121800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:30116400-30119400	Enhancers	HepG2	liver
6	chr6:30117000-30119200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:30117200-30119400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:30117200-30122000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:30117800-30119000	Bivalent Enhancer	Osteobl	bone
10	chr6:30117800-30119400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:30117800-30121600	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:30118000-30119000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:30118000-30119000	Bivalent Enhancer	NHDF-Ad	bronchial
14	chr6:30118000-30120600	Enhancers	K562	blood
15	chr6:30118400-30119200	Enhancers	HSMM	muscle
16	chr6:30118400-30122200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:30118600-30121400	Enhancers	Fetal Intestine Small	intestine
18	chr6:30118600-30125000	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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