Variant report

Variant	rs1420371
Chromosome Location	chr2:67191073-67191074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10519071	1.00[JPT][hapmap]
rs1362482	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17032729	1.00[JPT][hapmap]
rs17032742	0.85[ASN][1000 genomes]
rs17032755	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17032757	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs17032787	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61732614	0.85[ASN][1000 genomes]
rs72821481	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67185400-67193400	Weak transcription	Pancreas	Pancrea
2	chr2:67188000-67193400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:67188400-67191800	Enhancers	Colon Smooth Muscle	Colon
4	chr2:67188800-67192000	Enhancers	Rectal Smooth Muscle	rectum
5	chr2:67189000-67191400	Enhancers	Fetal Stomach	stomach
6	chr2:67189400-67191400	Enhancers	Fetal Heart	heart
7	chr2:67190400-67191600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:67190600-67191200	Weak transcription	Fetal Lung	lung
9	chr2:67190600-67193200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:67190800-67195200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:67191000-67191800	Enhancers	NHDF-Ad	bronchial
12	chr2:67191000-67192000	Enhancers	Brain Germinal Matrix	brain
13	chr2:67191000-67192000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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