Variant report

Variant	rs17032742
Chromosome Location	chr2:67142430-67142431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10490197	0.94[ASN][1000 genomes]
rs10490198	0.94[ASN][1000 genomes]
rs10519066	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10519071	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1362482	0.90[ASN][1000 genomes]
rs1420371	0.85[ASN][1000 genomes]
rs17032707	0.94[ASN][1000 genomes]
rs17032729	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17032755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032772	0.81[ASN][1000 genomes]
rs17032787	0.90[ASN][1000 genomes]
rs17633037	0.94[ASN][1000 genomes]
rs17633115	0.94[ASN][1000 genomes]
rs17684006	0.94[ASN][1000 genomes]
rs3732048	0.94[ASN][1000 genomes]
rs56393855	0.94[ASN][1000 genomes]
rs61732614	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs966706	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67141200-67142600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:67141400-67142800	Enhancers	Colon Smooth Muscle	Colon
3	chr2:67141400-67143000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:67141400-67143600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:67141600-67142600	Enhancers	NHLF	lung
6	chr2:67141800-67152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:67142200-67142800	Enhancers	Rectal Smooth Muscle	rectum
8	chr2:67142400-67142600	Enhancers	Aorta	Aorta
9	chr2:67142400-67142800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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