Variant report
Variant | rs1362482 |
---|---|
Chromosome Location | chr2:67172589-67172590 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:3 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-MEIS1-5 | chr2:67172420-67172606 | ENSG00000230525 |
2 | lnc-MEIS1-5 | chr2:67172420-67172606 | ENSG00000230525 |
3 | lnc-MEIS1-5 | chr2:67172420-67172606 | NR_110169 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10490197 | 0.84[ASN][1000 genomes] |
rs10490198 | 0.84[ASN][1000 genomes] |
rs10519066 | 0.80[ASN][1000 genomes] |
rs10519071 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1420371 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17032707 | 0.84[ASN][1000 genomes] |
rs17032729 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs17032742 | 0.90[ASN][1000 genomes] |
rs17032755 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs17032757 | 1.00[CHB][hapmap];0.90[ASN][1000 genomes] |
rs17032772 | 0.84[ASN][1000 genomes] |
rs17032787 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17633037 | 0.84[ASN][1000 genomes] |
rs17633115 | 0.84[ASN][1000 genomes] |
rs17684006 | 0.84[ASN][1000 genomes] |
rs3732048 | 0.84[ASN][1000 genomes] |
rs56393855 | 0.84[ASN][1000 genomes] |
rs61732614 | 0.90[ASN][1000 genomes] |
rs966706 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1008584 | chr2:67168244-67703601 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
2 | nsv535775 | chr2:67168244-67703601 | Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:67165800-67179400 | Weak transcription | Fetal Lung | lung |