Variant report

Variant	rs17032729
Chromosome Location	chr2:67126903-67126904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490198	1.00[ASN][1000 genomes]
rs10519066	0.83[ASN][1000 genomes]
rs10519071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362482	0.84[ASN][1000 genomes]
rs17032707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032742	0.94[ASN][1000 genomes]
rs17032755	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17032757	0.94[ASN][1000 genomes]
rs17032772	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17032787	0.84[ASN][1000 genomes]
rs17633037	1.00[ASN][1000 genomes]
rs17633115	1.00[ASN][1000 genomes]
rs17684006	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3732048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393855	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732614	0.94[ASN][1000 genomes]
rs966706	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874247	chr2:67105342-67141322	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67123800-67127000	Enhancers	Rectal Smooth Muscle	rectum
2	chr2:67124200-67127200	Enhancers	Colon Smooth Muscle	Colon
3	chr2:67124600-67128400	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:67124800-67128200	Weak transcription	Fetal Heart	heart
5	chr2:67124800-67128400	Weak transcription	Fetal Kidney	kidney
6	chr2:67125600-67128600	Weak transcription	Ovary	ovary
7	chr2:67125600-67128800	Weak transcription	NHDF-Ad	bronchial
8	chr2:67125800-67128400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:67125800-67128600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:67126200-67127200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:67126200-67129000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:67126600-67128800	Weak transcription	HSMMtube	muscle
13	chr2:67126800-67128200	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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