Variant report

Variant	rs17032757
Chromosome Location	chr2:67148761-67148762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10490197	0.94[ASN][1000 genomes]
rs10490198	0.94[ASN][1000 genomes]
rs10519066	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10519071	0.94[ASN][1000 genomes]
rs1362482	0.90[ASN][1000 genomes]
rs1420371	0.85[ASN][1000 genomes]
rs17032707	0.94[ASN][1000 genomes]
rs17032729	0.94[ASN][1000 genomes]
rs17032742	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032772	0.81[ASN][1000 genomes]
rs17032787	0.90[ASN][1000 genomes]
rs17633037	0.94[ASN][1000 genomes]
rs17633115	0.94[ASN][1000 genomes]
rs17684006	0.94[ASN][1000 genomes]
rs3732048	0.94[ASN][1000 genomes]
rs56393855	0.94[ASN][1000 genomes]
rs61732614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs966706	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67141800-67152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:67142600-67150400	Weak transcription	Aorta	Aorta
3	chr2:67145400-67156600	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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