Variant report

Variant	rs966706
Chromosome Location	chr2:67125052-67125053
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490197	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490198	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10519066	0.83[ASN][1000 genomes]
rs10519071	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362482	0.84[ASN][1000 genomes]
rs17032707	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032742	0.94[ASN][1000 genomes]
rs17032755	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17032757	0.94[ASN][1000 genomes]
rs17032772	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17032787	0.84[ASN][1000 genomes]
rs17633037	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17633115	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17684006	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3732048	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393855	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732614	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874247	chr2:67105342-67141322	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67116200-67125200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:67123000-67125800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:67123200-67125800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:67123200-67126200	Enhancers	Fetal Lung	lung
5	chr2:67123400-67126000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:67123400-67126200	Enhancers	Fetal Stomach	stomach
7	chr2:67123600-67125800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:67123600-67126600	Enhancers	HSMMtube	muscle
9	chr2:67123800-67125400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr2:67123800-67125600	Enhancers	HSMM	muscle
11	chr2:67123800-67125600	Enhancers	NHDF-Ad	bronchial
12	chr2:67123800-67127000	Enhancers	Rectal Smooth Muscle	rectum
13	chr2:67124000-67125600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:67124000-67125800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:67124000-67126800	Enhancers	NHLF	lung
16	chr2:67124200-67125200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:67124200-67125400	Enhancers	Brain Germinal Matrix	brain
18	chr2:67124200-67125400	Enhancers	NH-A	brain
19	chr2:67124200-67125800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:67124200-67127200	Enhancers	Colon Smooth Muscle	Colon
21	chr2:67124400-67126200	Enhancers	Stomach Smooth Muscle	stomach
22	chr2:67124600-67125800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:67124600-67128400	Weak transcription	Fetal Muscle Leg	muscle
24	chr2:67124800-67125400	Weak transcription	Osteobl	bone
25	chr2:67124800-67128200	Weak transcription	Fetal Heart	heart
26	chr2:67124800-67128400	Weak transcription	Fetal Kidney	kidney
27	chr2:67125000-67125400	Weak transcription	Ovary	ovary
28	chr2:67125000-67125800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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