Variant report

Variant	rs56393855
Chromosome Location	chr2:67157700-67157701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67155725..67158631-chr2:67159256..67162147,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490197	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490198	1.00[ASN][1000 genomes]
rs10519066	0.83[ASN][1000 genomes]
rs10519071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362482	0.84[ASN][1000 genomes]
rs17032707	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032729	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032742	0.94[ASN][1000 genomes]
rs17032755	0.94[ASN][1000 genomes]
rs17032757	0.94[ASN][1000 genomes]
rs17032772	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17032787	0.84[ASN][1000 genomes]
rs17633037	1.00[ASN][1000 genomes]
rs17633115	1.00[ASN][1000 genomes]
rs17684006	1.00[ASN][1000 genomes]
rs3732048	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732614	0.94[ASN][1000 genomes]
rs966706	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67156600-67158000	Enhancers	Fetal Heart	heart
2	chr2:67156600-67158400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:67156800-67157800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:67156800-67157800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr2:67156800-67158000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr2:67156800-67158400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:67156800-67158600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:67156800-67158800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr2:67156800-67159200	Enhancers	Ovary	ovary
10	chr2:67157000-67157800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:67157000-67157800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr2:67157000-67157800	Enhancers	NHDF-Ad	bronchial
13	chr2:67157000-67157800	Enhancers	NHLF	lung
14	chr2:67157000-67158000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:67157000-67158000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:67157000-67158000	Enhancers	Stomach Smooth Muscle	stomach
17	chr2:67157000-67158200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:67157000-67158200	Enhancers	Fetal Stomach	stomach
19	chr2:67157000-67158200	Enhancers	Rectal Smooth Muscle	rectum
20	chr2:67157000-67158400	Enhancers	Fetal Lung	lung
21	chr2:67157000-67159000	Enhancers	Fetal Kidney	kidney
22	chr2:67157200-67157800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:67157200-67158400	Enhancers	Primary hematopoietic stem cells	blood
24	chr2:67157400-67157800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:67157400-67157800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:67157400-67157800	Enhancers	Adipose Nuclei	Adipose
27	chr2:67157400-67157800	Enhancers	Liver	Liver
28	chr2:67157400-67158200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:67157400-67158200	Enhancers	HMEC	breast
30	chr2:67157600-67158000	Enhancers	Colon Smooth Muscle	Colon
31	chr2:67157600-67158000	Enhancers	NHEK	skin
32	chr2:67157600-67158200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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