Variant report

Variant	rs1431522
Chromosome Location	chr7:14627706-14627707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10156103	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10227646	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10236011	0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.80[TSI][hapmap];0.96[ASN][1000 genomes]
rs10246717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10246968	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10251321	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs10254418	0.92[CHD][hapmap];0.83[JPT][hapmap]
rs10256605	0.85[CEU][hapmap];0.87[CHD][hapmap]
rs10273764	0.92[CHD][hapmap]
rs11768578	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1189365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11983714	0.92[CHD][hapmap]
rs12670550	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1357864	0.98[ASN][1000 genomes]
rs1357865	0.98[ASN][1000 genomes]
rs1357866	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1357867	0.98[ASN][1000 genomes]
rs1357868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1357869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1474385	0.98[ASN][1000 genomes]
rs1525083	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1525088	0.92[CHD][hapmap]
rs1525089	0.88[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs1560478	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17150062	0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs17168296	0.85[ASN][1000 genomes]
rs17168298	0.90[CHD][hapmap];0.85[ASN][1000 genomes]
rs17168299	0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs17595206	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17595234	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17602988	0.92[CHD][hapmap]
rs17603201	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs17603341	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs3795245	1.00[ASN][1000 genomes]
rs3951243	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4537212	0.99[ASN][1000 genomes]
rs55681155	0.83[ASN][1000 genomes]
rs62443555	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62443556	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62443557	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66473448	0.97[ASN][1000 genomes]
rs6944740	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6951414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs6956742	0.92[CEU][hapmap]
rs6960433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6969050	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs73059484	0.83[ASN][1000 genomes]
rs73059497	0.81[ASN][1000 genomes]
rs7777504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7796807	0.86[ASN][1000 genomes]
rs7809502	0.98[ASN][1000 genomes]
rs7810871	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs879693	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs940690	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs940691	0.97[ASN][1000 genomes]
rs953604	0.84[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs953605	0.92[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv887711	chr7:14619026-14671325	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1431522	HDAC9	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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