Variant report

Variant	rs17150062
Chromosome Location	chr7:14644667-14644668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10156103	0.81[JPT][hapmap]
rs10227646	0.85[ASN][1000 genomes]
rs10236011	0.84[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs10246968	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10251321	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10254418	0.96[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10256605	0.85[CEU][hapmap];0.92[CHD][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10273764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11768578	0.86[ASN][1000 genomes]
rs1189365	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs11983714	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap]
rs12533572	0.82[ASN][1000 genomes]
rs12670550	0.84[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs1357864	0.86[ASN][1000 genomes]
rs1357865	0.86[ASN][1000 genomes]
rs1357866	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs1357867	0.86[ASN][1000 genomes]
rs1357868	0.86[ASN][1000 genomes]
rs1357869	0.86[ASN][1000 genomes]
rs1431522	0.90[CHD][hapmap]
rs1474385	0.86[ASN][1000 genomes]
rs1525083	0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs1525088	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]
rs1525089	0.84[CEU][hapmap];0.89[CHB][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1560478	0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs17168296	0.91[CEU][hapmap];0.94[CHB][hapmap];0.98[GIH][hapmap];0.84[JPT][hapmap];0.80[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168298	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17168299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17595206	0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs17595234	0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs17602988	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap]
rs17603201	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs17603341	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs2049450	0.83[CEU][hapmap]
rs3795245	0.86[ASN][1000 genomes]
rs3920402	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3951243	0.85[ASN][1000 genomes]
rs4537212	0.85[ASN][1000 genomes]
rs55681155	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62443555	0.85[ASN][1000 genomes]
rs62443556	0.86[ASN][1000 genomes]
rs62443557	0.86[ASN][1000 genomes]
rs66473448	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6944740	0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs6947430	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6951414	0.83[JPT][hapmap]
rs6956742	0.88[CEU][hapmap]
rs6969050	0.94[CHB][hapmap]
rs73059484	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73059497	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7777504	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs7796807	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809502	0.86[ASN][1000 genomes]
rs7810871	0.90[CHD][hapmap]
rs879693	0.82[CEU][hapmap];0.89[CHD][hapmap];0.87[ASN][1000 genomes]
rs940690	0.87[ASN][1000 genomes]
rs940691	0.87[ASN][1000 genomes]
rs953604	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs953605	0.84[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv887711	chr7:14619026-14671325	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14638000-14645800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14641600-14648800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14642200-14644800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:14644200-14645000	Enhancers	HMEC	breast
5	chr7:14644200-14645600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:14644600-14645600	Weak transcription	Fetal Heart	heart
7	chr7:14644600-14645800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:14644600-14646400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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