Variant report

Variant	rs6944740
Chromosome Location	chr7:14639749-14639750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14638736..14641616-chr7:14642716..14644563,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10156103	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs10227646	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10236011	0.94[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.86[MKK][hapmap];0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10246717	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10246968	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10251321	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs10254418	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs10256605	0.84[CHD][hapmap]
rs10273764	0.89[CHD][hapmap]
rs11768578	0.98[ASN][1000 genomes]
rs11773345	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1189365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11983714	0.89[CHD][hapmap]
rs12670550	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1357864	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357865	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1357867	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357868	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431522	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs1474385	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525083	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1525088	0.89[CHD][hapmap]
rs1525089	0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs1560478	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17150062	0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs17168296	0.86[ASN][1000 genomes]
rs17168298	0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs17168299	0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs17595206	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17595234	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17602988	0.89[CHD][hapmap]
rs17603201	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs17603341	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs3795245	0.98[ASN][1000 genomes]
rs3951243	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4537212	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55681155	0.84[ASN][1000 genomes]
rs62443555	0.95[ASN][1000 genomes]
rs62443556	0.96[ASN][1000 genomes]
rs62443557	0.96[ASN][1000 genomes]
rs66473448	0.98[ASN][1000 genomes]
rs6951414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6960433	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6969050	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs73059484	0.84[ASN][1000 genomes]
rs73059497	0.82[ASN][1000 genomes]
rs7777504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7796807	0.86[ASN][1000 genomes]
rs7809502	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810871	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs879693	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs940690	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs940691	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs953604	0.84[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs953605	0.80[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv887711	chr7:14619026-14671325	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14635800-14640600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:14636600-14644200	Weak transcription	HMEC	breast
3	chr7:14636800-14644400	Weak transcription	Osteobl	bone
4	chr7:14638000-14645800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:14638400-14640000	Enhancers	Fetal Heart	heart
6	chr7:14639400-14642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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