Variant report

Variant	rs17602988
Chromosome Location	chr7:14653702-14653703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10227646	0.83[ASN][1000 genomes]
rs10236011	0.84[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.87[ASN][1000 genomes]
rs10246968	0.87[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs10251321	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs10254418	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.88[TSI][hapmap]
rs10256605	0.95[CHD][hapmap]
rs10273764	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs11768578	0.83[ASN][1000 genomes]
rs1189365	0.81[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap]
rs11983714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12533572	0.81[ASN][1000 genomes]
rs12670550	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1357864	0.84[ASN][1000 genomes]
rs1357865	0.84[ASN][1000 genomes]
rs1357866	0.83[ASN][1000 genomes]
rs1357867	0.84[ASN][1000 genomes]
rs1357868	0.84[ASN][1000 genomes]
rs1357869	0.84[ASN][1000 genomes]
rs1431522	0.92[CHD][hapmap]
rs1474385	0.84[ASN][1000 genomes]
rs1525083	0.84[CEU][hapmap];0.95[CHD][hapmap];0.85[ASN][1000 genomes]
rs1525088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap]
rs1525089	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1560478	0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs17150062	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168296	0.94[CHB][hapmap];0.89[GIH][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17168298	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168299	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17595206	0.89[CHD][hapmap];0.83[ASN][1000 genomes]
rs17595234	0.89[CHD][hapmap];0.83[ASN][1000 genomes]
rs17603201	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs17603341	0.88[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2049450	1.00[CEU][hapmap]
rs3795245	0.83[ASN][1000 genomes]
rs3920402	0.86[ASN][1000 genomes]
rs3951243	0.83[ASN][1000 genomes]
rs4537212	0.83[ASN][1000 genomes]
rs55681155	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62443555	0.83[ASN][1000 genomes]
rs62443556	0.83[ASN][1000 genomes]
rs62443557	0.83[ASN][1000 genomes]
rs66473448	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6944740	0.89[CHD][hapmap];0.84[ASN][1000 genomes]
rs6969050	0.83[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs73059484	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73059497	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7777504	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs7796807	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7809502	0.84[ASN][1000 genomes]
rs7810871	0.92[CHD][hapmap]
rs879693	0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs940690	0.85[ASN][1000 genomes]
rs940691	0.85[ASN][1000 genomes]
rs953604	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs953605	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv887711	chr7:14619026-14671325	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1801711	chr7:14646986-14658908	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links