Variant report

Variant	rs10256605
Chromosome Location	chr7:14679433-14679434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14673431..14676037-chr7:14677776..14679633,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10236011	0.84[CHD][hapmap];0.85[AMR][1000 genomes]
rs10246968	0.84[CEU][hapmap]
rs10251321	0.85[CEU][hapmap]
rs10254418	0.84[CEU][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs10273764	0.85[CEU][hapmap];0.95[CHD][hapmap];0.85[TSI][hapmap]
rs11983714	0.95[CHD][hapmap]
rs13226071	0.81[CEU][hapmap]
rs13235991	0.82[CEU][hapmap]
rs1357866	0.88[CEU][hapmap]
rs1431522	0.85[CEU][hapmap];0.87[CHD][hapmap]
rs1525083	0.90[CHD][hapmap]
rs1525088	0.95[CHD][hapmap]
rs1560478	0.87[CHD][hapmap]
rs17150062	0.85[CEU][hapmap];0.92[CHD][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17168296	0.82[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17168298	0.85[CEU][hapmap];0.92[CHD][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17168299	0.85[CEU][hapmap];0.92[CHD][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17595206	0.84[CHD][hapmap]
rs17595234	0.84[CHD][hapmap]
rs17602988	0.95[CHD][hapmap]
rs17603201	0.88[CEU][hapmap]
rs17603341	0.81[CEU][hapmap]
rs2462566	0.89[CEU][hapmap]
rs3920402	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4317471	0.89[CEU][hapmap]
rs6944740	0.84[CHD][hapmap]
rs6947430	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6956742	0.96[CEU][hapmap]
rs7786421	0.82[CHB][hapmap]
rs7796807	0.85[EUR][1000 genomes]
rs7810871	0.87[CHD][hapmap]
rs7811333	0.82[MEX][hapmap]
rs879693	0.88[CEU][hapmap];0.86[CHD][hapmap]
rs953604	0.95[CHD][hapmap]
rs953605	0.95[CHD][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10256605	HDAC9	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14675000-14679600	Enhancers	Liver	Liver
2	chr7:14678200-14679600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:14678200-14680400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:14678800-14680000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:14678800-14680400	Enhancers	HMEC	breast
6	chr7:14679000-14679800	Enhancers	NHEK	skin
7	chr7:14679000-14680200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:14679000-14680200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:14679000-14680200	Enhancers	Stomach Mucosa	stomach
10	chr7:14679200-14683200	Weak transcription	Pancreas	Pancrea

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