Variant report

Variant	rs3920402
Chromosome Location	chr7:14671263-14671264
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14657855..14660530-chr7:14668724..14671460,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10236011	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs10246968	0.85[CEU][hapmap]
rs10251321	0.86[CEU][hapmap]
rs10254418	0.84[CEU][hapmap]
rs10256605	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10273764	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs1189365	0.83[CEU][hapmap]
rs11983714	0.88[JPT][hapmap]
rs13226071	0.82[CEU][hapmap]
rs13234741	0.84[ASN][1000 genomes]
rs13235991	0.82[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs1357866	0.89[CEU][hapmap]
rs1431522	0.85[CEU][hapmap]
rs1525088	0.88[JPT][hapmap]
rs17150062	0.85[CEU][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17168296	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17168298	0.85[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17168299	0.85[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17602988	0.88[JPT][hapmap]
rs17603201	0.89[CEU][hapmap]
rs17603341	0.83[CEU][hapmap]
rs2462566	0.89[CEU][hapmap]
rs4317471	0.89[CEU][hapmap]
rs55681155	0.86[ASN][1000 genomes]
rs6947430	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6956742	0.96[CEU][hapmap]
rs73059484	0.86[ASN][1000 genomes]
rs73059497	0.88[ASN][1000 genomes]
rs7796807	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs879693	0.88[CEU][hapmap]
rs953604	0.86[ASN][1000 genomes]
rs953605	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887711	chr7:14619026-14671325	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14671000-14671400	Active TSS	Liver	Liver

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