Variant report

Variant	rs1443904
Chromosome Location	chr13:53936386-53936387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1342678	0.90[AMR][1000 genomes]
rs1443915	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1550667	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1596435	0.90[AMR][1000 genomes]
rs1838276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857200	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2587360	0.89[AFR][1000 genomes]
rs2587362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797082	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55694139	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56064429	0.90[AMR][1000 genomes]
rs58282045	0.90[AMR][1000 genomes]
rs7325608	0.90[AMR][1000 genomes]
rs73490431	0.90[AMR][1000 genomes]
rs73499026	0.90[AMR][1000 genomes]
rs9568850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1040236	chr13:53928195-53955060	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1051184	chr13:53928195-53956469	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53935600-53937600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:53936200-53937400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:53936200-53937800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links