Variant report

Variant	rs1443915
Chromosome Location	chr13:53917082-53917083
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1342678	0.90[AMR][1000 genomes]
rs1443904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1550667	1.00[AMR][1000 genomes]
rs1596435	0.90[AMR][1000 genomes]
rs1838276	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857200	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2120433	1.00[YRI][hapmap]
rs2587360	0.87[AFR][1000 genomes]
rs2587362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813571	0.95[YRI][hapmap]
rs55694139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56064429	0.90[AMR][1000 genomes]
rs58282045	0.90[AMR][1000 genomes]
rs7325608	0.90[AMR][1000 genomes]
rs73490431	0.90[AMR][1000 genomes]
rs73499026	0.90[AMR][1000 genomes]
rs9568850	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53914400-53918400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:53916200-53917600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:53916600-53917200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr13:53916600-53917200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr13:53916600-53917200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr13:53916600-53917400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:53916600-53918600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:53916800-53917200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
9	chr13:53916800-53917400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
10	chr13:53916800-53917600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:53916800-53917800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr13:53916800-53917800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:53916800-53917800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:53916800-53917800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:53917000-53917400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:53917000-53917600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr13:53917000-53917600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr13:53917000-53917600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr13:53917000-53917800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:53917000-53917800	Enhancers	Brain Germinal Matrix	brain

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