Variant report

Variant	rs1596435
Chromosome Location	chr13:53981252-53981253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1342678	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1443904	0.90[AMR][1000 genomes]
rs1443907	0.83[AFR][1000 genomes]
rs1443915	0.90[AMR][1000 genomes]
rs1550667	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1838276	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1857200	0.90[AMR][1000 genomes]
rs2587362	0.90[AMR][1000 genomes]
rs2797082	0.90[AMR][1000 genomes]
rs4884433	0.83[AFR][1000 genomes]
rs55694139	0.90[AMR][1000 genomes]
rs56064429	0.80[AMR][1000 genomes]
rs58282045	0.80[AMR][1000 genomes]
rs6561721	0.81[AFR][1000 genomes]
rs7320836	0.83[AFR][1000 genomes]
rs7325608	0.80[AMR][1000 genomes]
rs73490431	0.80[AMR][1000 genomes]
rs73499026	0.80[AMR][1000 genomes]
rs9568850	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53972400-53983200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:53980000-53983600	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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