Variant report
| Variant | rs2587362 |
|---|---|
| Chromosome Location | chr13:53920049-53920050 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:53917930..53919463-chr13:53919847..53922635,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OLFM4-9 | chr13:53919346-53920093 | NONHSAT034018 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1342678 | 0.90[AMR][1000 genomes] |
| rs1443904 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1443915 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1550667 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1596435 | 0.90[AMR][1000 genomes] |
| rs1838276 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1857200 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2120433 | 1.00[YRI][hapmap] |
| rs2587360 | 0.88[AFR][1000 genomes] |
| rs2797082 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2813571 | 0.95[YRI][hapmap] |
| rs55694139 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56064429 | 0.90[AMR][1000 genomes] |
| rs58282045 | 0.90[AMR][1000 genomes] |
| rs7325608 | 0.90[AMR][1000 genomes] |
| rs73490431 | 0.90[AMR][1000 genomes] |
| rs73499026 | 0.90[AMR][1000 genomes] |
| rs9568850 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2756368 | chr13:53824599-53923599 | Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
