Variant report

Variant	rs2120433
Chromosome Location	chr13:53943593-53943594
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1342678	0.90[AMR][1000 genomes]
rs1443904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1443915	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1550667	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1596435	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1838276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857200	1.00[AMR][1000 genomes]
rs2587360	0.85[AFR][1000 genomes]
rs2587362	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797082	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813571	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.95[YRI][hapmap]
rs55694139	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56064429	0.90[AMR][1000 genomes]
rs58282045	0.90[AMR][1000 genomes]
rs7325608	0.90[AMR][1000 genomes]
rs73490431	0.90[AMR][1000 genomes]
rs73499026	0.90[AMR][1000 genomes]
rs9568850	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1040236	chr13:53928195-53955060	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1051184	chr13:53928195-53956469	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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