Variant report

Variant	rs1550667
Chromosome Location	chr13:53972589-53972590
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1342678	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1443904	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1443915	1.00[AMR][1000 genomes]
rs1596435	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1838276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857200	1.00[AMR][1000 genomes]
rs2120433	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap]
rs2587362	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797082	1.00[AMR][1000 genomes]
rs2813571	0.86[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs55694139	1.00[AMR][1000 genomes]
rs56064429	0.90[AMR][1000 genomes]
rs58282045	0.90[AMR][1000 genomes]
rs7325608	0.90[AMR][1000 genomes]
rs73490431	0.90[AMR][1000 genomes]
rs73499026	0.90[AMR][1000 genomes]
rs9568850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53972400-53973400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:53972400-53973400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:53972400-53983200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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