Variant report

Variant	rs1447596
Chromosome Location	chr3:135355771-135355772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11710710	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098514	0.88[ASN][1000 genomes]
rs1348971	0.93[EUR][1000 genomes]
rs1374778	0.93[EUR][1000 genomes]
rs1374781	0.93[EUR][1000 genomes]
rs1374782	0.93[EUR][1000 genomes]
rs1374783	0.93[EUR][1000 genomes]
rs1374784	0.93[EUR][1000 genomes]
rs1597063	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843204	0.91[EUR][1000 genomes]
rs1839011	0.93[EUR][1000 genomes]
rs2121715	0.93[EUR][1000 genomes]
rs2218625	0.93[EUR][1000 genomes]
rs35700836	0.97[ASN][1000 genomes]
rs3850168	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458391	0.93[EUR][1000 genomes]
rs4894270	0.93[EUR][1000 genomes]
rs4894310	0.93[EUR][1000 genomes]
rs4894312	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6439586	0.93[EUR][1000 genomes]
rs6768196	0.93[EUR][1000 genomes]
rs6786782	0.91[EUR][1000 genomes]
rs6801071	0.93[EUR][1000 genomes]
rs7647247	0.93[EUR][1000 genomes]
rs9814548	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9844022	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv524122	chr3:135345493-135457953	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135348000-135367400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:135353600-135357200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:135353800-135357200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links