Variant report

Variant	rs6768196
Chromosome Location	chr3:135377509-135377510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11710710	0.91[EUR][1000 genomes]
rs1348971	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374778	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374781	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374782	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374783	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374784	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447596	0.93[EUR][1000 genomes]
rs1597063	0.95[EUR][1000 genomes]
rs16843204	0.84[EUR][1000 genomes]
rs1839011	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121715	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218625	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850168	0.91[EUR][1000 genomes]
rs4458391	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894270	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4894310	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894312	1.00[EUR][1000 genomes]
rs6439586	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786782	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801071	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647247	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814548	0.95[EUR][1000 genomes]
rs9844022	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv524122	chr3:135345493-135457953	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135376800-135377800	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr3:135377000-135378000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr3:135377200-135377600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr3:135377200-135377600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:135377200-135377800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr3:135377200-135377800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr3:135377200-135377800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr3:135377200-135377800	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr3:135377400-135377600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:135377400-135377800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
11	chr3:135377400-135377800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:135377400-135377800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:135377400-135378000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr3:135377400-135378000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:135377400-135378000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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