Variant report
| Variant | rs9814548 |
|---|---|
| Chromosome Location | chr3:135361053-135361054 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11710710 | 0.87[EUR][1000 genomes] |
| rs1348971 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1374778 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1374781 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1374782 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1374783 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1374784 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1447596 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1597063 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs16843204 | 0.80[EUR][1000 genomes] |
| rs1839011 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2121715 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2218625 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3850168 | 0.87[EUR][1000 genomes] |
| rs4458391 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4894270 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4894310 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4894312 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6439586 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6768196 | 0.95[EUR][1000 genomes] |
| rs6786782 | 0.98[EUR][1000 genomes] |
| rs6801071 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7627163 | 1.00[JPT][hapmap] |
| rs7647247 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9844022 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9865234 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460860 | chr3:135107678-135769006 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv591829 | chr3:135107678-135769006 | Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv524122 | chr3:135345493-135457953 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:135348000-135367400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr3:135360200-135361400 | Weak transcription | Psoas Muscle | Psoas |
