Variant report

Variant	rs16843204
Chromosome Location	chr3:135338001-135338002
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11710710	0.93[EUR][1000 genomes]
rs1348971	0.84[EUR][1000 genomes]
rs1374769	0.92[AFR][1000 genomes]
rs1374778	0.84[EUR][1000 genomes]
rs1374781	0.84[EUR][1000 genomes]
rs1374782	0.84[EUR][1000 genomes]
rs1374783	0.84[EUR][1000 genomes]
rs1374784	0.84[EUR][1000 genomes]
rs1447596	0.91[EUR][1000 genomes]
rs1447599	0.92[AFR][1000 genomes]
rs1597063	0.80[EUR][1000 genomes]
rs1839011	0.84[EUR][1000 genomes]
rs2121715	0.84[EUR][1000 genomes]
rs2218625	0.84[EUR][1000 genomes]
rs3850168	0.93[EUR][1000 genomes]
rs4458391	0.84[EUR][1000 genomes]
rs4894270	0.84[EUR][1000 genomes]
rs4894310	0.84[EUR][1000 genomes]
rs4894312	0.84[EUR][1000 genomes]
rs6439586	0.84[EUR][1000 genomes]
rs6768196	0.84[EUR][1000 genomes]
rs6782493	0.93[AFR][1000 genomes]
rs6786782	0.82[EUR][1000 genomes]
rs6801071	0.84[EUR][1000 genomes]
rs7644294	0.97[AFR][1000 genomes]
rs7647247	0.84[EUR][1000 genomes]
rs9814548	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135336800-135338200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:135337600-135340200	Weak transcription	Psoas Muscle	Psoas
3	chr3:135338000-135338200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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