Variant report
| Variant | rs4894312 |
|---|---|
| Chromosome Location | chr3:135373397-135373398 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11710710 | 0.91[EUR][1000 genomes] |
| rs1348971 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1374778 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1374781 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1374782 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1374783 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1374784 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1447596 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1597063 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16843204 | 0.84[EUR][1000 genomes] |
| rs1839011 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2121715 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2218625 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3850168 | 0.91[EUR][1000 genomes] |
| rs4458391 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4894270 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4894310 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6439586 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6768196 | 1.00[EUR][1000 genomes] |
| rs6786782 | 0.98[EUR][1000 genomes] |
| rs6801071 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7647247 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9814548 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9844022 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460860 | chr3:135107678-135769006 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv591829 | chr3:135107678-135769006 | Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv524122 | chr3:135345493-135457953 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3463534 | chr3:135371801-135373605 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3463535 | chr3:135371801-135373605 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 6 | esv19330 | chr3:135371923-135373460 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:135372000-135373600 | Weak transcription | Pancreas | Pancrea |
