Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215163670..215166597-chr1:215252249..215254651,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494993	0.84[CHB][hapmap];0.85[CHD][hapmap]
rs10864143	0.85[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs11120462	0.85[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap]
rs12025854	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12030239	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12031300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12037651	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12041425	0.85[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12131478	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs12732551	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12738331	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1452607	1.00[ASW][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1452612	0.89[ASW][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs1545504	0.89[EUR][1000 genomes]
rs1869201	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34087768	0.80[ASN][1000 genomes]
rs34119346	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4655387	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs7514693	0.80[ASN][1000 genomes]
rs7535449	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1452623	FLVCR1	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215163800-215166800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:215163800-215168200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:215164000-215166800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:215164200-215166800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:215164200-215166800	Weak transcription	NHLF	lung
6	chr1:215164200-215167800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:215164200-215174800	Weak transcription	NH-A	brain
8	chr1:215164400-215166600	Weak transcription	NHEK	skin
9	chr1:215164800-215166800	Weak transcription	HMEC	breast
10	chr1:215164800-215166800	Weak transcription	Osteobl	bone
11	chr1:215164800-215167000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:215165200-215166600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:215165200-215166600	Weak transcription	NHDF-Ad	bronchial
15	chr1:215165200-215166800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: