Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10494989	0.91[CHD][hapmap]
rs10494991	0.91[CHD][hapmap]
rs12026832	0.91[CHD][hapmap]
rs12030239	0.87[EUR][1000 genomes]
rs12031300	0.89[EUR][1000 genomes]
rs12037651	0.89[EUR][1000 genomes]
rs12141327	0.91[CHD][hapmap]
rs12732551	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12738331	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1377173	0.91[CHD][hapmap]
rs1452623	0.89[EUR][1000 genomes]
rs1584759	0.89[CHD][hapmap]
rs1597847	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs17024148	0.89[CHD][hapmap]
rs1869201	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2123331	0.90[CHD][hapmap]
rs2601607	0.91[CHD][hapmap]
rs2601609	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs2601618	0.91[CHD][hapmap]
rs2601624	0.91[CHD][hapmap]
rs2601625	0.89[CHD][hapmap]
rs2601634	0.91[ASN][1000 genomes]
rs2601640	0.89[CHD][hapmap]
rs2601646	0.82[CHB][hapmap]
rs2601650	0.91[CHB][hapmap];0.91[CHD][hapmap];0.86[ASN][1000 genomes]
rs2802644	0.91[CHD][hapmap]
rs2841575	0.89[CHD][hapmap]
rs2841595	0.82[CHB][hapmap]
rs2841598	0.91[CHD][hapmap]
rs2841612	0.91[CHD][hapmap]
rs2841615	0.89[CHD][hapmap]
rs2841616	0.90[ASN][1000 genomes]
rs2841621	0.90[ASN][1000 genomes]
rs2841622	0.91[ASN][1000 genomes]
rs34119346	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1545504	C4orf41	trans	cerebellum	SCAN
rs1545504	FLVCR1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215164200-215174800	Weak transcription	NH-A	brain
2	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215167200-215170600	Weak transcription	Osteobl	bone
4	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:215168600-215169200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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