Variant report

Variant	rs12738331
Chromosome Location	chr1:215165037-215165038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215163670..215166597-chr1:215252249..215254651,2	MCF-7	breast:

rs_ID	r²[population]
rs10494989	0.81[CHB][hapmap]
rs10494991	0.86[CHB][hapmap]
rs10494992	0.86[CHB][hapmap]
rs10779633	0.82[CHB][hapmap]
rs10779634	0.82[CHB][hapmap]
rs10779635	0.82[CHB][hapmap]
rs12025854	0.88[EUR][1000 genomes]
rs12026832	0.81[CHB][hapmap]
rs12030239	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12031300	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12037651	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12732551	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1377173	0.81[CHB][hapmap]
rs1377175	0.82[CHB][hapmap]
rs1377177	0.86[CHB][hapmap]
rs1452608	0.82[CHB][hapmap]
rs1452609	0.82[CHB][hapmap]
rs1452610	0.82[CHB][hapmap]
rs1452623	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1545504	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1584759	0.86[CHB][hapmap]
rs17024148	0.86[CHB][hapmap]
rs1869201	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2123331	0.86[CHB][hapmap]
rs2262937	0.82[CHB][hapmap]
rs2601607	0.81[CHB][hapmap]
rs2601610	0.82[CHB][hapmap]
rs2601612	0.82[CHB][hapmap]
rs2601613	0.82[CHB][hapmap]
rs2601614	0.82[CHB][hapmap]
rs2601618	0.81[CHB][hapmap]
rs2601621	0.82[CHB][hapmap]
rs2601624	0.81[CHB][hapmap]
rs2601625	0.81[CHB][hapmap]
rs2601634	0.85[ASN][1000 genomes]
rs2601636	0.82[CHB][hapmap]
rs2601638	0.82[CHB][hapmap]
rs2601640	0.81[CHB][hapmap]
rs2601641	0.82[CHB][hapmap]
rs2601646	0.87[CHB][hapmap]
rs2802643	0.82[CHB][hapmap]
rs2802644	0.81[CHB][hapmap]
rs2802649	0.82[CHB][hapmap]
rs2802657	0.82[CHB][hapmap]
rs2841574	0.81[CHB][hapmap]
rs2841575	0.81[CHB][hapmap]
rs2841577	0.82[CHB][hapmap]
rs2841595	0.87[CHB][hapmap]
rs2841597	0.82[CHB][hapmap]
rs2841598	0.81[CHB][hapmap]
rs2841599	0.82[CHB][hapmap]
rs2841604	0.82[CHB][hapmap]
rs2841606	0.82[CHB][hapmap]
rs2841607	0.82[CHB][hapmap]
rs2841608	0.82[CHB][hapmap]
rs2841609	0.85[CHB][hapmap]
rs2841612	0.81[CHB][hapmap]
rs2841613	0.82[CHB][hapmap]
rs2841615	0.86[CHB][hapmap]
rs2841616	0.85[ASN][1000 genomes]
rs2841621	0.84[ASN][1000 genomes]
rs2841622	0.85[ASN][1000 genomes]
rs34119346	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215162000-215165200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215162400-215165200	Enhancers	NHDF-Ad	bronchial
3	chr1:215163800-215166800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:215163800-215168200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:215164000-215166800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:215164200-215166800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:215164200-215166800	Weak transcription	NHLF	lung
8	chr1:215164200-215167800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:215164200-215174800	Weak transcription	NH-A	brain
10	chr1:215164400-215166600	Weak transcription	NHEK	skin
11	chr1:215164600-215165200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:215164800-215166800	Weak transcription	HMEC	breast
13	chr1:215164800-215166800	Weak transcription	Osteobl	bone
14	chr1:215164800-215167000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--

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