Variant report
| Variant | rs1481417 |
|---|---|
| Chromosome Location | chr14:85196163-85196164 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:112308570..112309331-chr14:85196106..85196606,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1110774 | 0.84[LWK][hapmap];0.96[YRI][hapmap] |
| rs1952168 | 0.88[YRI][hapmap] |
| rs2623122 | 1.00[ASN][1000 genomes] |
| rs2623123 | 1.00[ASN][1000 genomes] |
| rs2623145 | 1.00[ASN][1000 genomes] |
| rs2765916 | 1.00[ASN][1000 genomes] |
| rs2819809 | 1.00[ASN][1000 genomes] |
| rs2819810 | 1.00[ASN][1000 genomes] |
| rs2819817 | 1.00[ASN][1000 genomes] |
| rs2819820 | 1.00[ASN][1000 genomes] |
| rs2819825 | 1.00[ASN][1000 genomes] |
| rs2922650 | 1.00[ASN][1000 genomes] |
| rs2922655 | 1.00[ASN][1000 genomes] |
| rs2998292 | 1.00[ASN][1000 genomes] |
| rs2998324 | 1.00[ASN][1000 genomes] |
| rs3008502 | 1.00[ASN][1000 genomes] |
| rs3008503 | 1.00[ASN][1000 genomes] |
| rs72692351 | 1.00[ASN][1000 genomes] |
| rs72694502 | 1.00[ASN][1000 genomes] |
| rs8011868 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv1829021 | chr14:85106009-85196163 | Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv902163 | chr14:85165200-85390134 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv84619 | chr14:85194069-85197739 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1481417 | RPRD1B | trans | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85195200-85196200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
