Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1481417	1.00[ASN][1000 genomes]
rs17120164	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2623122	1.00[ASN][1000 genomes]
rs2623123	1.00[ASN][1000 genomes]
rs2623145	1.00[ASN][1000 genomes]
rs2765916	1.00[ASN][1000 genomes]
rs2819809	1.00[ASN][1000 genomes]
rs2819810	1.00[ASN][1000 genomes]
rs2819817	1.00[ASN][1000 genomes]
rs2819820	1.00[ASN][1000 genomes]
rs2819825	1.00[ASN][1000 genomes]
rs2922650	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2922655	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2998292	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2998324	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008503	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67337403	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67928577	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72692351	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694502	1.00[ASN][1000 genomes]
rs8011868	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1052415	chr14:85001891-85078853	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv456354	chr14:85046837-85110699	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv565377	chr14:85046837-85110699	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv902162	chr14:85048957-85131164	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85058600-85060200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr14:85058800-85060000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:85058800-85067200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:85059400-85061400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search: