Variant report
| Variant | rs2819825 |
|---|---|
| Chromosome Location | chr14:85204859-85204860 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr14:85204722-85205034 | HepG2 | liver: | n/a | chr14:85204860-85204871 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU6-976P | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1481417 | 1.00[ASN][1000 genomes] |
| rs2623122 | 1.00[ASN][1000 genomes] |
| rs2623123 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2623145 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2765916 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2819809 | 1.00[ASN][1000 genomes] |
| rs2819810 | 1.00[ASN][1000 genomes] |
| rs2819817 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2819820 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2819824 | 1.00[CEU][hapmap] |
| rs2922650 | 1.00[ASN][1000 genomes] |
| rs2922655 | 1.00[ASN][1000 genomes] |
| rs2998292 | 1.00[ASN][1000 genomes] |
| rs2998324 | 1.00[ASN][1000 genomes] |
| rs3008502 | 1.00[ASN][1000 genomes] |
| rs3008503 | 1.00[ASN][1000 genomes] |
| rs72692351 | 1.00[ASN][1000 genomes] |
| rs72694502 | 1.00[ASN][1000 genomes] |
| rs8011868 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv902163 | chr14:85165200-85390134 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85203800-85205400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
