Variant report
| Variant | rs2922650 |
|---|---|
| Chromosome Location | chr14:85060671-85060672 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1037251 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs1481417 | 1.00[ASN][1000 genomes] |
| rs17120162 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1839238 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2623122 | 1.00[ASN][1000 genomes] |
| rs2623123 | 1.00[ASN][1000 genomes] |
| rs2623145 | 1.00[ASN][1000 genomes] |
| rs2765916 | 1.00[ASN][1000 genomes] |
| rs2819809 | 1.00[ASN][1000 genomes] |
| rs2819810 | 1.00[ASN][1000 genomes] |
| rs2819817 | 1.00[ASN][1000 genomes] |
| rs2819820 | 1.00[ASN][1000 genomes] |
| rs2819825 | 1.00[ASN][1000 genomes] |
| rs2922651 | 0.86[AFR][1000 genomes] |
| rs2922655 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2998292 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2998324 | 0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3008502 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3008503 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3008504 | 0.82[AMR][1000 genomes] |
| rs3008505 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs66616861 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs66808827 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs66879618 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72692351 | 1.00[ASN][1000 genomes] |
| rs72694502 | 1.00[ASN][1000 genomes] |
| rs8011868 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046875 | chr14:84993510-85193250 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052415 | chr14:85001891-85078853 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv456354 | chr14:85046837-85110699 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv565377 | chr14:85046837-85110699 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv902162 | chr14:85048957-85131164 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85058800-85067200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr14:85059400-85061400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
