Variant report

Variant	rs1482451
Chromosome Location	chr6:64597086-64597087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10944131	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12204149	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12212467	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12660411	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13216525	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.90[TSI][hapmap]
rs1384324	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1482449	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1482459	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482460	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1482461	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1482463	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1825209	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1977622	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs321498	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321499	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321502	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321503	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3800489	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap]
rs4710449	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6454470	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6454475	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6454476	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756274	1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap]
rs7753631	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7762059	0.86[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs7768206	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025270	chr6:64574202-64608983	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1020226	chr6:64582008-64793525	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538271	chr6:64582008-64793525	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv603376	chr6:64589465-64771342	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64595600-64597600	Enhancers	Fetal Lung	lung

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