Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64503767..64506389-chr6:64511361..64513457,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1029091	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10943958	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10944026	0.98[ASN][1000 genomes]
rs12523702	0.87[LWK][hapmap]
rs13197043	0.90[ASN][1000 genomes]
rs13199206	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13199805	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13208965	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13216525	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1412864	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1977622	0.84[ASN][1000 genomes]
rs3800489	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.90[ASN][1000 genomes]
rs3800490	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs4142266	0.91[ASN][1000 genomes]
rs4351235	0.92[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap]
rs4634434	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4710257	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4710436	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4710439	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4710449	0.82[ASN][1000 genomes]
rs58429651	0.85[ASN][1000 genomes]
rs7762059	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7764184	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs756274	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64485200-64514400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:64497000-64514400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:64502000-64506200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:64502800-64506200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:64503000-64505800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:64503000-64506200	Enhancers	NHDF-Ad	bronchial
7	chr6:64504000-64509400	Weak transcription	Stomach Mucosa	stomach
8	chr6:64504600-64505800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:64504800-64505800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:64505200-64506200	Enhancers	Monocytes-CD14+_RO01746	blood

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