Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:64520832-64521434	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
EYS	TF binding region

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10944026	0.89[ASN][1000 genomes]
rs10944131	0.85[EUR][1000 genomes]
rs12204149	0.84[EUR][1000 genomes]
rs12212467	0.85[EUR][1000 genomes]
rs12660411	0.85[EUR][1000 genomes]
rs13197043	0.81[ASN][1000 genomes]
rs13199206	0.83[ASN][1000 genomes]
rs13216525	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1384324	0.85[EUR][1000 genomes]
rs1412864	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1482449	0.85[EUR][1000 genomes]
rs1482460	0.85[EUR][1000 genomes]
rs1482461	0.85[EUR][1000 genomes]
rs1482463	0.84[EUR][1000 genomes]
rs1825209	0.85[EUR][1000 genomes]
rs1977622	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs321498	0.85[EUR][1000 genomes]
rs321499	0.84[EUR][1000 genomes]
rs321502	0.85[EUR][1000 genomes]
rs321503	0.85[EUR][1000 genomes]
rs3800489	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3800490	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4142266	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4351235	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4710257	0.80[ASN][1000 genomes]
rs4710436	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4710439	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4710449	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6454470	0.85[EUR][1000 genomes]
rs6454475	0.85[EUR][1000 genomes]
rs6454476	0.85[EUR][1000 genomes]
rs756274	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7753631	0.85[EUR][1000 genomes]
rs7768206	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64518200-64523600	Weak transcription	NHEK	skin
2	chr6:64519200-64531400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:64519400-64523600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:64519400-64526000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:64519600-64525800	Weak transcription	HSMMtube	muscle

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