Variant report

Variant	rs148375041
Chromosome Location	chr1:246945654-246945655
allele	-/AC/CA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949571	chr1:246688635-247240863	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv873421	chr1:246818634-247044692	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv2762192	chr1:246823857-247069232	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1006271	chr1:246832606-247276182	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv535416	chr1:246832606-247276182	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv430413	chr1:246845971-246975015	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv873422	chr1:246854862-247002638	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1011346	chr1:246868799-247133898	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv1006262	chr1:246892826-246964775	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv523531	chr1:246893948-246967899	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv999756	chr1:246894542-246969660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv1009436	chr1:246910373-246965832	Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv873423	chr1:246923861-246978504	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
14	nsv549545	chr1:246936353-246963019	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	esv2756894	chr1:246939856-246946021	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	esv2759013	chr1:246939856-246946021	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	esv3408268	chr1:246944429-246948627	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv1841827	chr1:246944502-246954313	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	esv3491345	chr1:246945629-246947627	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv3491346	chr1:246945629-246947627	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:246888400-246946400	Weak transcription	Small Intestine	intestine
2	chr1:246902800-246952800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:246905000-246945800	Weak transcription	Psoas Muscle	Psoas
4	chr1:246921600-246945800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:246924400-246945800	Weak transcription	Primary B cells from cord blood	blood
6	chr1:246925200-246952200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:246932400-246945800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:246932400-246952000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:246932600-246948000	Strong transcription	Liver	Liver
10	chr1:246932600-246948600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:246932600-246948600	Weak transcription	Esophagus	oesophagus
12	chr1:246932800-246945800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:246932800-246948800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:246932800-246952400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:246932800-246956400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:246933200-246945800	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:246938400-246945800	Strong transcription	Fetal Stomach	stomach
18	chr1:246938400-246947200	Strong transcription	Fetal Intestine Small	intestine
19	chr1:246940200-246945800	Weak transcription	GM12878-XiMat	blood
20	chr1:246940200-246947600	Weak transcription	HUVEC	blood vessel
21	chr1:246940200-246948800	Weak transcription	Fetal Brain Male	brain
22	chr1:246940400-246945800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:246940400-246949000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:246940600-246945800	Weak transcription	Primary T cells from cord blood	blood
25	chr1:246940600-246945800	Weak transcription	Ovary	ovary
26	chr1:246940600-246945800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr1:246940600-246948600	Weak transcription	Brain Angular Gyrus	brain
28	chr1:246940600-246948800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:246940600-246948800	Weak transcription	Fetal Kidney	kidney
30	chr1:246940800-246945800	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:246940800-246948000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:246940800-246951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:246940800-246951600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:246941200-246948200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr1:246941200-246952600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:246941600-246948800	Weak transcription	Colonic Mucosa	Colon
37	chr1:246941600-246948800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr1:246941600-246952200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr1:246942200-246949000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr1:246942600-246945800	Weak transcription	Left Ventricle	heart
41	chr1:246942800-246952200	Weak transcription	Fetal Brain Female	brain
42	chr1:246943000-246945800	Weak transcription	Aorta	Aorta
43	chr1:246943000-246948000	Enhancers	Primary hematopoietic stem cells	blood
44	chr1:246943400-246945800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr1:246943400-246945800	Weak transcription	Spleen	Spleen
46	chr1:246943400-246952000	Weak transcription	Brain Anterior Caudate	brain
47	chr1:246944200-246945800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:246944200-246945800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr1:246944200-246947800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:246944400-246948800	Weak transcription	Gastric	stomach

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