Variant report

Variant	rs1492676
Chromosome Location	chr8:113371942-113371943
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1019350	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1019351	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10505176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10955617	0.80[EUR][1000 genomes]
rs10955618	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1158895	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11774512	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11775013	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11775082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11775215	0.81[ASN][1000 genomes]
rs11776386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11778155	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs11778209	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11778262	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11778443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs11778532	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11780474	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11782384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap]
rs11783361	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11783495	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11783519	0.95[EUR][1000 genomes]
rs11784683	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11785270	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11785419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs11786836	0.83[EUR][1000 genomes]
rs11989521	0.85[EUR][1000 genomes]
rs1388963	0.83[JPT][hapmap]
rs1420857	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1492678	0.82[JPT][hapmap]
rs1548986	0.95[CHB][hapmap];0.96[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16883301	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs16883320	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16883325	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16883359	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16883360	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16883401	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16883404	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16883432	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap]
rs16883437	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16883454	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap]
rs16883506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1861753	0.87[EUR][1000 genomes]
rs1861754	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs1861755	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1948411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994795	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap]
rs1994796	0.93[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2052339	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2098455	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs2111426	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2111427	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2131298	0.82[JPT][hapmap]
rs2201203	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2353271	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3922407	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3950674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3950676	0.82[JPT][hapmap]
rs4143626	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4398953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4428695	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4577984	0.83[JPT][hapmap]
rs55691798	0.94[EUR][1000 genomes]
rs59534399	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62514386	0.94[EUR][1000 genomes]
rs62514388	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62514389	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62514394	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514395	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514396	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514397	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514400	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514401	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514402	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62514417	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514453	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6415459	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6469413	0.82[JPT][hapmap]
rs7003500	0.82[JPT][hapmap]
rs7009195	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72672877	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72672894	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72674722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72674733	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72674741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72674746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7820425	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7825635	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7826270	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7838852	0.83[JPT][hapmap]
rs7844829	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7845628	0.82[JPT][hapmap]
rs7845794	0.83[JPT][hapmap]
rs888254	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs929686	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs950983	0.87[EUR][1000 genomes]
rs990616	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv891323	chr8:113359377-113394699	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113350000-113378600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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